Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015820697.1_cds_XP_016500508.1_14327
CDS Infomation

[gene=LOC107818941] [db_xref=GeneID:107818941] [protein=pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like] [protein_id=XP_016500508.1] [location=11633..13189] [gbkey=CDS]
Sequence

ATGGCCCTCCCTGCCTACACGGTCAGTGCCGCCACCTCTCTGCCGTCGACGTCTCCGCAT
CCGCCACTCACTCATTTCGCTCACAAAAACGCCACCACCACCGATCGCAGCCGTTCAAAA
TTCCAATTAGCTCTTAAGAACCCCAGCAATAATCTCGACTCTACTGCTTCTTGGACCTCG
TTAATAGCCAATCACTGCCGAAACGGCCGCTTAATCGAGGCAGTTTCCGAGTTCACCCGC
ATGAGGATTTACGGCTTTGAACCCAATCACGTTACCTTCGTTACTATGCTCTCCGGCTGT
GCCCATTTTCCCGCGCAAGCTCTCTCCATCGGATCTGCTCTTCACGCATATGCTAAAAAA
CTCGGGTTGGATACTCAGAATGTGAAAGTGGGTACTGCTATTATCGATATGTATTCTAAG
TTTGGACTTTTGGAGCTTGCTAGATTGAGTTTTGATCATGTCGGTATCAAGAATAAGGTG
ACTTGGAACACCATGGTTGATGGCTACATGAGAAATGGCGATTTCAGGAATGCAGTTAAG
GTGTTCGATGAAATTCCTGAGAGAGATGTCATTTCTTGGACGGCCTTGATTGGTGGATTT
GTCAAGAATGAGCTTTTTGAAGAAGCTTTAGTATGGTTTCAAGAAATGCAGTTATCTGGG
GTGGAGCCTGATTATGTAACAATGATTTCGGTGCTTTCTGCTTGTGCTAATTTGGGGACA
CTTGGTATAAGCCTATGGTTGCACCGATTTATCTTGCGACGTGAATTTAAGAACAATGTT
CGTGTTAATAACACGTTAATCGACTTGTATTGTAGGTGTGGATGTGTAGAATTGGCATGC
CAGGTATTTGATAAAATGTTCGAGAGAAGCTTGGTTTCATGGAACTCAATCATTGTAGGT
TTAGCTGTCAATGGGCATGCAGCGGATGCTCTACTATATTTCAATTTGATGCAAAAGGAA
AGGTTTAAACCAGATGCTGTGACATTTACAGGAGTTCTCACCGCATGTAGCCATGCTGGT
ATGGTTGAGGAGGGATTAAAGTATTTCAAAGCAATGAAAGGAGTTCATAGGATTTCTCCA
AGGATTGAGCATTACGGGTGCATAGTTGATCTTTACAGCCGTGCTGGAAGATTAGAAGAT
GCATTAGGTGTTATTAAGAATATGACTGTGAAGCCAAATGAAGTTGTATTGGGGTCTATA
TTAGCAGCTTGTCGAAATCTTAAGGATGTAAGACTAGCTGAAAGGCTAATGCATTATATT
TATGAGTTGGATCCGGGTGGAGATTCAAATCATGTGTTGCTATCTAATATATATGCTGCA
GTTGGAAGTTGGCACGGAGCTAGCACTGTGAGGAAGAAAATGAAGGATCTTGGAATACAA
AAGAGACCAGGAATCAGTTCCATCGAGATTGATGGTGTTGTTAATGAATTTGTGGCTGGA
AATAGATCCCATATCCGTTCACAGCAGATTTATGCAATGCTTGAGCTGTTGTCAGGTGAG
TTAAGAGTGTCTGGCTATGTTGAAGATAATGTGAATGAATCATATGGATGTGGTTGA

Peptide Sequence

PEP ID

XP_016500508.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g05750, chloroplastic-like [Nicotiana tabacum]
Sequence

MALPAYTVSAATSLPSTSPHPPLTHFAHKNATTTDRSRSKFQLALKNPSNNLDSTASWTS
LIANHCRNGRLIEAVSEFTRMRIYGFEPNHVTFVTMLSGCAHFPAQALSIGSALHAYAKK
LGLDTQNVKVGTAIIDMYSKFGLLELARLSFDHVGIKNKVTWNTMVDGYMRNGDFRNAVK
VFDEIPERDVISWTALIGGFVKNELFEEALVWFQEMQLSGVEPDYVTMISVLSACANLGT
LGISLWLHRFILRREFKNNVRVNNTLIDLYCRCGCVELACQVFDKMFERSLVSWNSIIVG
LAVNGHAADALLYFNLMQKERFKPDAVTFTGVLTACSHAGMVEEGLKYFKAMKGVHRISP
RIEHYGCIVDLYSRAGRLEDALGVIKNMTVKPNEVVLGSILAACRNLKDVRLAERLMHYI
YELDPGGDSNHVLLSNIYAAVGSWHGASTVRKKMKDLGIQKRPGISSIEIDGVVNEFVAG
NRSHIRSQQIYAMLELLSGELRVSGYVEDNVNESYGCG

Transcript Sequence

Gene sequence data has not been registered.